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ConnectorSeqera

Seqera integration for Claude and Codex

Connect Seqera once, then control which Spaces can use its approved tools and data without pasting credentials into prompts or threads.

Use Seqera from Claude

Add the Seqera connection to a Space that runs Claude, then use it from every channel in that Space.

Use Seqera from Codex

Add the Seqera connection to a Space that runs Codex, then use it from every channel in that Space.

Use Seqera from Sidekick

Connect your own OpenClaw to Sidekick while type.com provides the conversations, permissions, connections, skills, and automations.

Developer Tools & IT

What the Seqera connector can do

Seqera manages Nextflow pipelines and the compute environments they run on, including container builds through its Wave service. A type.com Space working on bioinformatics or data pipelines can ask the agent to build a container, check build logs, or confirm account and organization details without switching to the Seqera console.

One connection, many Spaces

Connect Seqera once, then decide which Spaces can use it in threads, skills, automations, and coding work.

Use Seqera from Claude Code, Codex, and automations

Use Seqera from Claude Code or Codex

Once Seqera is connected in type.com, install the type.com CLI, and Claude Code or Codex can call its tools with type-cli integrations call. Calls run with your type.com access, and the credentials stay on type.com's servers.

Automate Seqera on a schedule or webhook

In a Space with Seqera connected, describe the job, and type.com proposes an automation with its trigger, schedule, and destination. Runs can start on a schedule or from a webhook, Slack, GitHub, Linear, email, or RSS, and each run leaves a thread the team can read.

What teams do with Seqera in type.com

Build a container for a pipeline run

Provision a container through Wave with a Dockerfile or package list, so a pipeline has what it needs before launch.

Try asking
Use Seqera's Wave service to build a container from this Dockerfile for our pipeline.

Debug a failed container build

Pull the build logs for a container to find out why it failed, without leaving the thread.

Try asking
Get the Wave build logs for this container ID so we can see what broke.

Confirm organization details before granting access

Check an organization's settings before adding a new workspace or team member to it.

Try asking
Get the organization details for our Seqera org before we add a new team.

Representative actions

  • Create Wave Container

    Submits a request to build or access a container through Wave, from a Dockerfile, Conda recipe, or package list.

  • Get Organization Details

    Retrieves detailed information about a specific Seqera organization.

  • Get Service Info

    Returns the Seqera API's version and commit ID, useful for troubleshooting.

  • Get User Info

    Retrieves details about the currently authenticated user.

  • Get Wave Build Logs

    Fetches logs for a container build, to inspect or troubleshoot the build process.

Connection

API and auth details

Seqera Platform exposes OpenAPI-described services for managing Nextflow workflows, compute environments, datasets, launches, workspaces, organizations, and monitoring data. Integrations can launch, manage, and observe scalable bioinformatics pipelines with bearer token authentication.

FAQ

Questions people ask before connecting Seqera

Can Claude manage Seqera pipelines and containers?

Yes. A Seqera connection lets the agent build containers, check build logs, and look up organization or user details directly from a thread.

How is Seqera authenticated in type.com?

Seqera uses an API key, added once by an admin on the connection, so engineers in approved Spaces don't need to manage it themselves.

Can container builds be triggered on a schedule?

Yes. Wrap a Seqera build or log check in a type.com automation, so the agent runs it on a schedule and reports results to a channel.

Can Claude Code or Codex use Seqera?

Yes. Once Seqera is connected in type.com, install the type.com CLI, and Claude Code or Codex can call its tools with type-cli integrations call. Calls run with your type.com access, and the credentials stay on type.com's servers.

Can I automate Seqera on a schedule?

Yes. In a Space with Seqera connected, describe the job, and type.com proposes an automation with its trigger, schedule, and destination. Runs can start on a schedule or from a webhook, Slack, GitHub, Linear, email, or RSS, and each run leaves a thread the team can read.

Is this the same as an MCP server for Seqera?

Not exactly. type.com uses connectors and connections to give selected Spaces access to approved app tools and data. Some connectors use hosted MCP, while others use OAuth, API keys, service accounts, or custom APIs.

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